A randomized lentivirus shRNA library construction.
Identifieur interne : 002B76 ( Main/Exploration ); précédent : 002B75; suivant : 002B77A randomized lentivirus shRNA library construction.
Auteurs : Qiang Guo [République populaire de Chine] ; Yirong Kong ; Ling Fu ; Ting Yu ; Junjie Xu ; Wei ChenSource :
- Biochemical and biophysical research communications [ 0006-291X ] ; 2007.
Descripteurs français
- KwdFr :
- MESH :
- génétique : ARN, ARN viral, Lentivirus.
- métabolisme : ARN.
- synthèse chimique : ADN viral.
- Animaux, Banque de gènes, Cellules CHO, Clonage moléculaire, Cricetinae, Cricetulus, Humains, Interférence par ARN, Régions promotrices (génétique).
English descriptors
- KwdEn :
- MESH :
- chemical , chemical synthesis : DNA, Viral.
- genetics : Lentivirus, RNA, RNA, Viral.
- chemical , metabolism : RNA.
- Animals, CHO Cells, Cloning, Molecular, Cricetinae, Cricetulus, Gene Library, Humans, Promoter Regions, Genetic, RNA Interference.
Abstract
Vector based shRNA (short hairpin RNA) expression library has been widely used to screen functional genes. For two main methods that have been used to generate short hairpin RNA libraries, chemical synthesis is too expensive to be widely used and the low efficiency of enzymatic approach makes it difficult to construct. We have developed a protocol to construct a new kind of shRNA library called randomized shRNA library. Within three steps chemically synthesized randomized 19-mers DNA were efficiently converted to double-stranded DNA fragments containing shRNA templates. This kind of shRNA library permits simple and economic construction, providing another choice for whole-genome phenotypic screening of genes.
DOI: 10.1016/j.bbrc.2007.04.123
PubMed: 17482565
Affiliations:
Links toward previous steps (curation, corpus...)
- to stream PubMed, to step Corpus: 002186
- to stream PubMed, to step Curation: 002186
- to stream PubMed, to step Checkpoint: 002080
- to stream Ncbi, to step Merge: 000519
- to stream Ncbi, to step Curation: 000519
- to stream Ncbi, to step Checkpoint: 000519
- to stream Main, to step Merge: 002C02
- to stream Main, to step Curation: 002B76
Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">A randomized lentivirus shRNA library construction.</title>
<author><name sortKey="Guo, Qiang" sort="Guo, Qiang" uniqKey="Guo Q" first="Qiang" last="Guo">Qiang Guo</name>
<affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, 20 Dongdajie, Fengtai, Beijing 100071, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, 20 Dongdajie, Fengtai, Beijing 100071</wicri:regionArea>
<placeName><settlement type="city">Pékin</settlement>
</placeName>
</affiliation>
</author>
<author><name sortKey="Kong, Yirong" sort="Kong, Yirong" uniqKey="Kong Y" first="Yirong" last="Kong">Yirong Kong</name>
</author>
<author><name sortKey="Fu, Ling" sort="Fu, Ling" uniqKey="Fu L" first="Ling" last="Fu">Ling Fu</name>
</author>
<author><name sortKey="Yu, Ting" sort="Yu, Ting" uniqKey="Yu T" first="Ting" last="Yu">Ting Yu</name>
</author>
<author><name sortKey="Xu, Junjie" sort="Xu, Junjie" uniqKey="Xu J" first="Junjie" last="Xu">Junjie Xu</name>
</author>
<author><name sortKey="Chen, Wei" sort="Chen, Wei" uniqKey="Chen W" first="Wei" last="Chen">Wei Chen</name>
</author>
</titleStmt>
<publicationStmt><idno type="wicri:source">PubMed</idno>
<date when="2007">2007</date>
<idno type="RBID">pubmed:17482565</idno>
<idno type="pmid">17482565</idno>
<idno type="doi">10.1016/j.bbrc.2007.04.123</idno>
<idno type="wicri:Area/PubMed/Corpus">002186</idno>
<idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">002186</idno>
<idno type="wicri:Area/PubMed/Curation">002186</idno>
<idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Curation">002186</idno>
<idno type="wicri:Area/PubMed/Checkpoint">002080</idno>
<idno type="wicri:explorRef" wicri:stream="Checkpoint" wicri:step="PubMed">002080</idno>
<idno type="wicri:Area/Ncbi/Merge">000519</idno>
<idno type="wicri:Area/Ncbi/Curation">000519</idno>
<idno type="wicri:Area/Ncbi/Checkpoint">000519</idno>
<idno type="wicri:doubleKey">0006-291X:2007:Guo Q:a:randomized:lentivirus</idno>
<idno type="wicri:Area/Main/Merge">002C02</idno>
<idno type="wicri:Area/Main/Curation">002B76</idno>
<idno type="wicri:Area/Main/Exploration">002B76</idno>
</publicationStmt>
<sourceDesc><biblStruct><analytic><title xml:lang="en">A randomized lentivirus shRNA library construction.</title>
<author><name sortKey="Guo, Qiang" sort="Guo, Qiang" uniqKey="Guo Q" first="Qiang" last="Guo">Qiang Guo</name>
<affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, 20 Dongdajie, Fengtai, Beijing 100071, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, 20 Dongdajie, Fengtai, Beijing 100071</wicri:regionArea>
<placeName><settlement type="city">Pékin</settlement>
</placeName>
</affiliation>
</author>
<author><name sortKey="Kong, Yirong" sort="Kong, Yirong" uniqKey="Kong Y" first="Yirong" last="Kong">Yirong Kong</name>
</author>
<author><name sortKey="Fu, Ling" sort="Fu, Ling" uniqKey="Fu L" first="Ling" last="Fu">Ling Fu</name>
</author>
<author><name sortKey="Yu, Ting" sort="Yu, Ting" uniqKey="Yu T" first="Ting" last="Yu">Ting Yu</name>
</author>
<author><name sortKey="Xu, Junjie" sort="Xu, Junjie" uniqKey="Xu J" first="Junjie" last="Xu">Junjie Xu</name>
</author>
<author><name sortKey="Chen, Wei" sort="Chen, Wei" uniqKey="Chen W" first="Wei" last="Chen">Wei Chen</name>
</author>
</analytic>
<series><title level="j">Biochemical and biophysical research communications</title>
<idno type="ISSN">0006-291X</idno>
<imprint><date when="2007" type="published">2007</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Animals</term>
<term>CHO Cells</term>
<term>Cloning, Molecular</term>
<term>Cricetinae</term>
<term>Cricetulus</term>
<term>DNA, Viral (chemical synthesis)</term>
<term>Gene Library</term>
<term>Humans</term>
<term>Lentivirus (genetics)</term>
<term>Promoter Regions, Genetic</term>
<term>RNA (genetics)</term>
<term>RNA (metabolism)</term>
<term>RNA Interference</term>
<term>RNA, Viral (genetics)</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr"><term>ADN viral (synthèse chimique)</term>
<term>ARN (génétique)</term>
<term>ARN (métabolisme)</term>
<term>ARN viral (génétique)</term>
<term>Animaux</term>
<term>Banque de gènes</term>
<term>Cellules CHO</term>
<term>Clonage moléculaire</term>
<term>Cricetinae</term>
<term>Cricetulus</term>
<term>Humains</term>
<term>Interférence par ARN</term>
<term>Lentivirus (génétique)</term>
<term>Régions promotrices (génétique)</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="chemical synthesis" xml:lang="en"><term>DNA, Viral</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Lentivirus</term>
<term>RNA</term>
<term>RNA, Viral</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>ARN</term>
<term>ARN viral</term>
<term>Lentivirus</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>RNA</term>
</keywords>
<keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>ARN</term>
</keywords>
<keywords scheme="MESH" qualifier="synthèse chimique" xml:lang="fr"><term>ADN viral</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Animals</term>
<term>CHO Cells</term>
<term>Cloning, Molecular</term>
<term>Cricetinae</term>
<term>Cricetulus</term>
<term>Gene Library</term>
<term>Humans</term>
<term>Promoter Regions, Genetic</term>
<term>RNA Interference</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr"><term>Animaux</term>
<term>Banque de gènes</term>
<term>Cellules CHO</term>
<term>Clonage moléculaire</term>
<term>Cricetinae</term>
<term>Cricetulus</term>
<term>Humains</term>
<term>Interférence par ARN</term>
<term>Régions promotrices (génétique)</term>
</keywords>
</textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en">Vector based shRNA (short hairpin RNA) expression library has been widely used to screen functional genes. For two main methods that have been used to generate short hairpin RNA libraries, chemical synthesis is too expensive to be widely used and the low efficiency of enzymatic approach makes it difficult to construct. We have developed a protocol to construct a new kind of shRNA library called randomized shRNA library. Within three steps chemically synthesized randomized 19-mers DNA were efficiently converted to double-stranded DNA fragments containing shRNA templates. This kind of shRNA library permits simple and economic construction, providing another choice for whole-genome phenotypic screening of genes.</div>
</front>
</TEI>
<affiliations><list><country><li>République populaire de Chine</li>
</country>
<settlement><li>Pékin</li>
</settlement>
</list>
<tree><noCountry><name sortKey="Chen, Wei" sort="Chen, Wei" uniqKey="Chen W" first="Wei" last="Chen">Wei Chen</name>
<name sortKey="Fu, Ling" sort="Fu, Ling" uniqKey="Fu L" first="Ling" last="Fu">Ling Fu</name>
<name sortKey="Kong, Yirong" sort="Kong, Yirong" uniqKey="Kong Y" first="Yirong" last="Kong">Yirong Kong</name>
<name sortKey="Xu, Junjie" sort="Xu, Junjie" uniqKey="Xu J" first="Junjie" last="Xu">Junjie Xu</name>
<name sortKey="Yu, Ting" sort="Yu, Ting" uniqKey="Yu T" first="Ting" last="Yu">Ting Yu</name>
</noCountry>
<country name="République populaire de Chine"><noRegion><name sortKey="Guo, Qiang" sort="Guo, Qiang" uniqKey="Guo Q" first="Qiang" last="Guo">Qiang Guo</name>
</noRegion>
</country>
</tree>
</affiliations>
</record>
Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Sante/explor/MersV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 002B76 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 002B76 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien |wiki= Sante |area= MersV1 |flux= Main |étape= Exploration |type= RBID |clé= pubmed:17482565 |texte= A randomized lentivirus shRNA library construction. }}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i -Sk "pubmed:17482565" \ | HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \ | NlmPubMed2Wicri -a MersV1
This area was generated with Dilib version V0.6.33. |